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rnase inhibitor  (New England Biolabs)


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    Structured Review

    New England Biolabs rnase inhibitor
    Rnase Inhibitor, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 3321 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rnase+inhibitor/RNase+Inhibitor%2C+Murine/pmc13693657-183-54-58
    Average 99 stars, based on 3321 article reviews
    rnase inhibitor - by Bioz Stars, 2026-11
    99/100 stars

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    Related Articles

    In Vitro:

    Article Title: Structural basis for start codon selection by eIF5-mimic proteins
    Article Snippet: .. In vitro transcription reactions were carried out using 4 μg of purified DNA templates and purified recombinant T7 polymerase in transcription buffer [166 mM Hepes-KOH; (pH 7.5); 20 mM MgCl 2 ; 40 mM DTT; 2 mM spermidine; 25 mM each of adenosine 5′-triphosphate (ATP), guanosine 5′-triphosphate (GTP), cytidine 5′-triphosphate, and uridine 5′-triphosphate; and RNase Inhibitor (40 U/μl; NEB, M0314S)] in an 80-μl reaction. ..

    Purification:

    Article Title: Structural basis for start codon selection by eIF5-mimic proteins
    Article Snippet: .. In vitro transcription reactions were carried out using 4 μg of purified DNA templates and purified recombinant T7 polymerase in transcription buffer [166 mM Hepes-KOH; (pH 7.5); 20 mM MgCl 2 ; 40 mM DTT; 2 mM spermidine; 25 mM each of adenosine 5′-triphosphate (ATP), guanosine 5′-triphosphate (GTP), cytidine 5′-triphosphate, and uridine 5′-triphosphate; and RNase Inhibitor (40 U/μl; NEB, M0314S)] in an 80-μl reaction. ..

    Recombinant:

    Article Title: Structural basis for start codon selection by eIF5-mimic proteins
    Article Snippet: .. In vitro transcription reactions were carried out using 4 μg of purified DNA templates and purified recombinant T7 polymerase in transcription buffer [166 mM Hepes-KOH; (pH 7.5); 20 mM MgCl 2 ; 40 mM DTT; 2 mM spermidine; 25 mM each of adenosine 5′-triphosphate (ATP), guanosine 5′-triphosphate (GTP), cytidine 5′-triphosphate, and uridine 5′-triphosphate; and RNase Inhibitor (40 U/μl; NEB, M0314S)] in an 80-μl reaction. ..

    Article Title: Protocol for mechanical nuclei dissociation and isolation from frozen tissue and organoids for single-nucleus RNA sequencing.
    Article Snippet: Note: If working with a tissue typically composed of a large number of cells (or more than 2 million cells), dilute the sample 1:10 in DNase/RNase-free water directly into the tube containing Trypan Blue prior to counting. .. Biological samples Mouse brain tissue C57BL/6 (hemisphere) This study N/A Human ESC-derived cerebral organoids* This study WIBR1 Chemicals, peptides, and recombinant proteins Anti-Nucleus MicroBeads Miltenyi Biotec Cat#130-132-997 Bovine serum albumin (BSA) Bio Basic Cat# A0903 DAPI Sigma-Aldrich Cat#D9542 Dimethyl sulfoxide (DMSO) Sigma-Aldrich Cat#D8418 DNase I Solution STEMCELL Technologies Cat#07900 Hydrochloric acid Sigma-Aldrich Cat#H1758 Nuclei Extraction Buffer Miltenyi Biotec Cat#130-128-024 Phosphate-buffered saline (D-PBS) Sigma-Aldrich Cat#P4474 RNase Inhibitor, Murine New England Biolabs Cat#M0314L Trypan Blue stain, 0.4% Thermo Fisher Scientific Cat#T10282 UltraPure DNase/RNase-Free Distilled Water Invitrogen Cat#10977-015 Critical commercial assays EVERCODE Nuclei Fixation v3 Parse Biosciences Cat#ECFN3300 STEMdiff Cerebral Organoid Kit STEMCELL Technologies Cat#08570 Software and algorithms BioRender BioRender https://www.biorender.com Other GentleMACS Dissociator Miltenyi Biotec Cat#130-093-235 GentleMACS C Tubes Miltenyi Biotec Cat#130-093-237 MACS MultiStand Miltenyi Biotec Cat#130-042-303 OctoMACS Separator Miltenyi Biotec Cat#130-042-109 MS Columns Miltenyi Biotec Cat#130-042-201 MACS SmartStrainers (100 μm) Miltenyi Biotec Cat#130-098-463 MACS SmartStrainers (70 μm) Miltenyi Biotec Cat#130-098-462 MACS SmartStrainers (30 μm) Miltenyi Biotec Cat#130-098-458 MACS Chill 15 Rack Miltenyi Biotec Cat#130-097-038 1.5 mL screw-cap microtubes Diamed Cat#DIATEC-2740 15 mL polypropylene conical tubes FroggaBio Cat#TB15-25 Disposable hemocytometer Incyto Cat#DHC-N01-5 Refrigerated centrifuge (15 mL and 1.5 mL rotors) Avantor Cat#76468-136; Cat#MP76533-878 Mr. Frosty freezing container Sigma-Aldrich Cat#CLS432001 25 mL reservoir Corning Cat#RES-V-25-S *Organoids differentiated using STEMdiff Cerebral Organoid Kit (key resource table). ..

    Isolation:

    Article Title: Human-specific morphoregulatory signatures in basal radial glia characterise neocortex evolution.
    Article Snippet: Transcriptome libraries were prepared using the SmartSeq 2 protocol, modified from96. .. Isolated total RNA from 10,000 or 5000 cells was denatured for 3min at 72 °C in 4 μL hypotonic buffer (0.2% Triton X-100) in the presence of 2.4mM dNTPs, 240 nM dT-primer and 4 U RNase Inhibitor (NEB). ..

    CMC:

    Article Title: PUS7 pseudouridylation of 7SK orchestrates human somatic cell reprogramming into iPS cells.
    Article Snippet: .. The CMC-treated and untreated RNA samples were resuspended in 6.5 μl of water and incubated with 0.5 μl of RNase inhibitor (New England Biolabs, M0307L), 1 μl of 1 mM ATP, 1 μl of 10× T4 polynucleotide kinase reaction buffer A and 1 μl of T4 polynucleotide kinase (New England Biolabs, M0201S) at 37 °C for 30 min. For RNA linker ligation, the following were added: 1 μl of 10× T4 RNA ligase reaction buffer, 1 μl of 100 μM RNA-5 oligo (/5AmMC6/ rArCrCrCrA/; Integrated DNA Technologies), 1 μl of T4 RNA Ligase I (New England Biolabs, M0437M), 1 μl of RNase inhibitor, 1 μl of 1 mM ATP, 3 μl of DMSO and 2 μl of water. ..

    Incubation:

    Article Title: PUS7 pseudouridylation of 7SK orchestrates human somatic cell reprogramming into iPS cells.
    Article Snippet: .. The CMC-treated and untreated RNA samples were resuspended in 6.5 μl of water and incubated with 0.5 μl of RNase inhibitor (New England Biolabs, M0307L), 1 μl of 1 mM ATP, 1 μl of 10× T4 polynucleotide kinase reaction buffer A and 1 μl of T4 polynucleotide kinase (New England Biolabs, M0201S) at 37 °C for 30 min. For RNA linker ligation, the following were added: 1 μl of 10× T4 RNA ligase reaction buffer, 1 μl of 100 μM RNA-5 oligo (/5AmMC6/ rArCrCrCrA/; Integrated DNA Technologies), 1 μl of T4 RNA Ligase I (New England Biolabs, M0437M), 1 μl of RNase inhibitor, 1 μl of 1 mM ATP, 3 μl of DMSO and 2 μl of water. ..

    Article Title: Sub-stoichiometric modifications of Aplysia californica tRNAs and tRNA fragments revealed by integrating intact and bottom-up mass spectrometry
    Article Snippet: Aplysia tRNA Glu CUC and tRNA Lys UUU were isolated from small RNA fractions using biotinylated complementary DNA probes (IDT) and streptavidin-functionalized Sepharose beads (Cytiva). .. First, 100 μL small RNA (∼400-500 ng/μL), 4 μL DNA probe (10 μM), 2.6 μL 20× SSC buffer (3 M sodium chloride, 300 mM trisodium citrate, pH adjusted to 7.0 with HCl), and 1 μL RNase inhibitor (New England Biolabs) were combined in a 200 μL PCR tube and incubated at 50 °C for 30 min. A 100 μL aliquot of the streptavidin-functionalized beads suspension was washed twice with 1 mL 0.5× SSC buffer by gentle trituration, centrifuged at 8000 g for 1 min, and the supernatant discarded. ..

    Ligation:

    Article Title: PUS7 pseudouridylation of 7SK orchestrates human somatic cell reprogramming into iPS cells.
    Article Snippet: .. The CMC-treated and untreated RNA samples were resuspended in 6.5 μl of water and incubated with 0.5 μl of RNase inhibitor (New England Biolabs, M0307L), 1 μl of 1 mM ATP, 1 μl of 10× T4 polynucleotide kinase reaction buffer A and 1 μl of T4 polynucleotide kinase (New England Biolabs, M0201S) at 37 °C for 30 min. For RNA linker ligation, the following were added: 1 μl of 10× T4 RNA ligase reaction buffer, 1 μl of 100 μM RNA-5 oligo (/5AmMC6/ rArCrCrCrA/; Integrated DNA Technologies), 1 μl of T4 RNA Ligase I (New England Biolabs, M0437M), 1 μl of RNase inhibitor, 1 μl of 1 mM ATP, 3 μl of DMSO and 2 μl of water. ..

    Reverse Transcription:

    Article Title: Impacts of different SETD1A mutations and genetic backgrounds on human induced pluripotent stem cell-derived hippocampal neurons
    Article Snippet: Then, 2 ml of 5x SMARTScribe RT buffer (TaKaRa), 0.5 ml of DTT (100 mM). .. 0.3 ml of MgCl2 (200 mM), 1 μl of dNTPs (10 mM), 1 μl of TSO primer (10 μM, 5’-AAGCAGTGGTATCAACGCAGAGTACATrGrGrG-3’) 0.25 μl of RNase inhibitor (NEB), and 0.5 μl SMARTScribe reverse transcriptase (TaKaRa) were added to the reaction. ..

    Tissue:

    Article Title: Protocol for mechanical nuclei dissociation and isolation from frozen tissue and organoids for single-nucleus RNA sequencing.
    Article Snippet: Note: If working with a tissue typically composed of a large number of cells (or more than 2 million cells), dilute the sample 1:10 in DNase/RNase-free water directly into the tube containing Trypan Blue prior to counting. .. Biological samples Mouse brain tissue C57BL/6 (hemisphere) This study N/A Human ESC-derived cerebral organoids* This study WIBR1 Chemicals, peptides, and recombinant proteins Anti-Nucleus MicroBeads Miltenyi Biotec Cat#130-132-997 Bovine serum albumin (BSA) Bio Basic Cat# A0903 DAPI Sigma-Aldrich Cat#D9542 Dimethyl sulfoxide (DMSO) Sigma-Aldrich Cat#D8418 DNase I Solution STEMCELL Technologies Cat#07900 Hydrochloric acid Sigma-Aldrich Cat#H1758 Nuclei Extraction Buffer Miltenyi Biotec Cat#130-128-024 Phosphate-buffered saline (D-PBS) Sigma-Aldrich Cat#P4474 RNase Inhibitor, Murine New England Biolabs Cat#M0314L Trypan Blue stain, 0.4% Thermo Fisher Scientific Cat#T10282 UltraPure DNase/RNase-Free Distilled Water Invitrogen Cat#10977-015 Critical commercial assays EVERCODE Nuclei Fixation v3 Parse Biosciences Cat#ECFN3300 STEMdiff Cerebral Organoid Kit STEMCELL Technologies Cat#08570 Software and algorithms BioRender BioRender https://www.biorender.com Other GentleMACS Dissociator Miltenyi Biotec Cat#130-093-235 GentleMACS C Tubes Miltenyi Biotec Cat#130-093-237 MACS MultiStand Miltenyi Biotec Cat#130-042-303 OctoMACS Separator Miltenyi Biotec Cat#130-042-109 MS Columns Miltenyi Biotec Cat#130-042-201 MACS SmartStrainers (100 μm) Miltenyi Biotec Cat#130-098-463 MACS SmartStrainers (70 μm) Miltenyi Biotec Cat#130-098-462 MACS SmartStrainers (30 μm) Miltenyi Biotec Cat#130-098-458 MACS Chill 15 Rack Miltenyi Biotec Cat#130-097-038 1.5 mL screw-cap microtubes Diamed Cat#DIATEC-2740 15 mL polypropylene conical tubes FroggaBio Cat#TB15-25 Disposable hemocytometer Incyto Cat#DHC-N01-5 Refrigerated centrifuge (15 mL and 1.5 mL rotors) Avantor Cat#76468-136; Cat#MP76533-878 Mr. Frosty freezing container Sigma-Aldrich Cat#CLS432001 25 mL reservoir Corning Cat#RES-V-25-S *Organoids differentiated using STEMdiff Cerebral Organoid Kit (key resource table). ..

    Organoids:

    Article Title: Protocol for mechanical nuclei dissociation and isolation from frozen tissue and organoids for single-nucleus RNA sequencing.
    Article Snippet: Note: If working with a tissue typically composed of a large number of cells (or more than 2 million cells), dilute the sample 1:10 in DNase/RNase-free water directly into the tube containing Trypan Blue prior to counting. .. Biological samples Mouse brain tissue C57BL/6 (hemisphere) This study N/A Human ESC-derived cerebral organoids* This study WIBR1 Chemicals, peptides, and recombinant proteins Anti-Nucleus MicroBeads Miltenyi Biotec Cat#130-132-997 Bovine serum albumin (BSA) Bio Basic Cat# A0903 DAPI Sigma-Aldrich Cat#D9542 Dimethyl sulfoxide (DMSO) Sigma-Aldrich Cat#D8418 DNase I Solution STEMCELL Technologies Cat#07900 Hydrochloric acid Sigma-Aldrich Cat#H1758 Nuclei Extraction Buffer Miltenyi Biotec Cat#130-128-024 Phosphate-buffered saline (D-PBS) Sigma-Aldrich Cat#P4474 RNase Inhibitor, Murine New England Biolabs Cat#M0314L Trypan Blue stain, 0.4% Thermo Fisher Scientific Cat#T10282 UltraPure DNase/RNase-Free Distilled Water Invitrogen Cat#10977-015 Critical commercial assays EVERCODE Nuclei Fixation v3 Parse Biosciences Cat#ECFN3300 STEMdiff Cerebral Organoid Kit STEMCELL Technologies Cat#08570 Software and algorithms BioRender BioRender https://www.biorender.com Other GentleMACS Dissociator Miltenyi Biotec Cat#130-093-235 GentleMACS C Tubes Miltenyi Biotec Cat#130-093-237 MACS MultiStand Miltenyi Biotec Cat#130-042-303 OctoMACS Separator Miltenyi Biotec Cat#130-042-109 MS Columns Miltenyi Biotec Cat#130-042-201 MACS SmartStrainers (100 μm) Miltenyi Biotec Cat#130-098-463 MACS SmartStrainers (70 μm) Miltenyi Biotec Cat#130-098-462 MACS SmartStrainers (30 μm) Miltenyi Biotec Cat#130-098-458 MACS Chill 15 Rack Miltenyi Biotec Cat#130-097-038 1.5 mL screw-cap microtubes Diamed Cat#DIATEC-2740 15 mL polypropylene conical tubes FroggaBio Cat#TB15-25 Disposable hemocytometer Incyto Cat#DHC-N01-5 Refrigerated centrifuge (15 mL and 1.5 mL rotors) Avantor Cat#76468-136; Cat#MP76533-878 Mr. Frosty freezing container Sigma-Aldrich Cat#CLS432001 25 mL reservoir Corning Cat#RES-V-25-S *Organoids differentiated using STEMdiff Cerebral Organoid Kit (key resource table). ..

    Extraction:

    Article Title: Protocol for mechanical nuclei dissociation and isolation from frozen tissue and organoids for single-nucleus RNA sequencing.
    Article Snippet: Note: If working with a tissue typically composed of a large number of cells (or more than 2 million cells), dilute the sample 1:10 in DNase/RNase-free water directly into the tube containing Trypan Blue prior to counting. .. Biological samples Mouse brain tissue C57BL/6 (hemisphere) This study N/A Human ESC-derived cerebral organoids* This study WIBR1 Chemicals, peptides, and recombinant proteins Anti-Nucleus MicroBeads Miltenyi Biotec Cat#130-132-997 Bovine serum albumin (BSA) Bio Basic Cat# A0903 DAPI Sigma-Aldrich Cat#D9542 Dimethyl sulfoxide (DMSO) Sigma-Aldrich Cat#D8418 DNase I Solution STEMCELL Technologies Cat#07900 Hydrochloric acid Sigma-Aldrich Cat#H1758 Nuclei Extraction Buffer Miltenyi Biotec Cat#130-128-024 Phosphate-buffered saline (D-PBS) Sigma-Aldrich Cat#P4474 RNase Inhibitor, Murine New England Biolabs Cat#M0314L Trypan Blue stain, 0.4% Thermo Fisher Scientific Cat#T10282 UltraPure DNase/RNase-Free Distilled Water Invitrogen Cat#10977-015 Critical commercial assays EVERCODE Nuclei Fixation v3 Parse Biosciences Cat#ECFN3300 STEMdiff Cerebral Organoid Kit STEMCELL Technologies Cat#08570 Software and algorithms BioRender BioRender https://www.biorender.com Other GentleMACS Dissociator Miltenyi Biotec Cat#130-093-235 GentleMACS C Tubes Miltenyi Biotec Cat#130-093-237 MACS MultiStand Miltenyi Biotec Cat#130-042-303 OctoMACS Separator Miltenyi Biotec Cat#130-042-109 MS Columns Miltenyi Biotec Cat#130-042-201 MACS SmartStrainers (100 μm) Miltenyi Biotec Cat#130-098-463 MACS SmartStrainers (70 μm) Miltenyi Biotec Cat#130-098-462 MACS SmartStrainers (30 μm) Miltenyi Biotec Cat#130-098-458 MACS Chill 15 Rack Miltenyi Biotec Cat#130-097-038 1.5 mL screw-cap microtubes Diamed Cat#DIATEC-2740 15 mL polypropylene conical tubes FroggaBio Cat#TB15-25 Disposable hemocytometer Incyto Cat#DHC-N01-5 Refrigerated centrifuge (15 mL and 1.5 mL rotors) Avantor Cat#76468-136; Cat#MP76533-878 Mr. Frosty freezing container Sigma-Aldrich Cat#CLS432001 25 mL reservoir Corning Cat#RES-V-25-S *Organoids differentiated using STEMdiff Cerebral Organoid Kit (key resource table). ..

    Saline:

    Article Title: Protocol for mechanical nuclei dissociation and isolation from frozen tissue and organoids for single-nucleus RNA sequencing.
    Article Snippet: Note: If working with a tissue typically composed of a large number of cells (or more than 2 million cells), dilute the sample 1:10 in DNase/RNase-free water directly into the tube containing Trypan Blue prior to counting. .. Biological samples Mouse brain tissue C57BL/6 (hemisphere) This study N/A Human ESC-derived cerebral organoids* This study WIBR1 Chemicals, peptides, and recombinant proteins Anti-Nucleus MicroBeads Miltenyi Biotec Cat#130-132-997 Bovine serum albumin (BSA) Bio Basic Cat# A0903 DAPI Sigma-Aldrich Cat#D9542 Dimethyl sulfoxide (DMSO) Sigma-Aldrich Cat#D8418 DNase I Solution STEMCELL Technologies Cat#07900 Hydrochloric acid Sigma-Aldrich Cat#H1758 Nuclei Extraction Buffer Miltenyi Biotec Cat#130-128-024 Phosphate-buffered saline (D-PBS) Sigma-Aldrich Cat#P4474 RNase Inhibitor, Murine New England Biolabs Cat#M0314L Trypan Blue stain, 0.4% Thermo Fisher Scientific Cat#T10282 UltraPure DNase/RNase-Free Distilled Water Invitrogen Cat#10977-015 Critical commercial assays EVERCODE Nuclei Fixation v3 Parse Biosciences Cat#ECFN3300 STEMdiff Cerebral Organoid Kit STEMCELL Technologies Cat#08570 Software and algorithms BioRender BioRender https://www.biorender.com Other GentleMACS Dissociator Miltenyi Biotec Cat#130-093-235 GentleMACS C Tubes Miltenyi Biotec Cat#130-093-237 MACS MultiStand Miltenyi Biotec Cat#130-042-303 OctoMACS Separator Miltenyi Biotec Cat#130-042-109 MS Columns Miltenyi Biotec Cat#130-042-201 MACS SmartStrainers (100 μm) Miltenyi Biotec Cat#130-098-463 MACS SmartStrainers (70 μm) Miltenyi Biotec Cat#130-098-462 MACS SmartStrainers (30 μm) Miltenyi Biotec Cat#130-098-458 MACS Chill 15 Rack Miltenyi Biotec Cat#130-097-038 1.5 mL screw-cap microtubes Diamed Cat#DIATEC-2740 15 mL polypropylene conical tubes FroggaBio Cat#TB15-25 Disposable hemocytometer Incyto Cat#DHC-N01-5 Refrigerated centrifuge (15 mL and 1.5 mL rotors) Avantor Cat#76468-136; Cat#MP76533-878 Mr. Frosty freezing container Sigma-Aldrich Cat#CLS432001 25 mL reservoir Corning Cat#RES-V-25-S *Organoids differentiated using STEMdiff Cerebral Organoid Kit (key resource table). ..

    Staining:

    Article Title: Protocol for mechanical nuclei dissociation and isolation from frozen tissue and organoids for single-nucleus RNA sequencing.
    Article Snippet: Note: If working with a tissue typically composed of a large number of cells (or more than 2 million cells), dilute the sample 1:10 in DNase/RNase-free water directly into the tube containing Trypan Blue prior to counting. .. Biological samples Mouse brain tissue C57BL/6 (hemisphere) This study N/A Human ESC-derived cerebral organoids* This study WIBR1 Chemicals, peptides, and recombinant proteins Anti-Nucleus MicroBeads Miltenyi Biotec Cat#130-132-997 Bovine serum albumin (BSA) Bio Basic Cat# A0903 DAPI Sigma-Aldrich Cat#D9542 Dimethyl sulfoxide (DMSO) Sigma-Aldrich Cat#D8418 DNase I Solution STEMCELL Technologies Cat#07900 Hydrochloric acid Sigma-Aldrich Cat#H1758 Nuclei Extraction Buffer Miltenyi Biotec Cat#130-128-024 Phosphate-buffered saline (D-PBS) Sigma-Aldrich Cat#P4474 RNase Inhibitor, Murine New England Biolabs Cat#M0314L Trypan Blue stain, 0.4% Thermo Fisher Scientific Cat#T10282 UltraPure DNase/RNase-Free Distilled Water Invitrogen Cat#10977-015 Critical commercial assays EVERCODE Nuclei Fixation v3 Parse Biosciences Cat#ECFN3300 STEMdiff Cerebral Organoid Kit STEMCELL Technologies Cat#08570 Software and algorithms BioRender BioRender https://www.biorender.com Other GentleMACS Dissociator Miltenyi Biotec Cat#130-093-235 GentleMACS C Tubes Miltenyi Biotec Cat#130-093-237 MACS MultiStand Miltenyi Biotec Cat#130-042-303 OctoMACS Separator Miltenyi Biotec Cat#130-042-109 MS Columns Miltenyi Biotec Cat#130-042-201 MACS SmartStrainers (100 μm) Miltenyi Biotec Cat#130-098-463 MACS SmartStrainers (70 μm) Miltenyi Biotec Cat#130-098-462 MACS SmartStrainers (30 μm) Miltenyi Biotec Cat#130-098-458 MACS Chill 15 Rack Miltenyi Biotec Cat#130-097-038 1.5 mL screw-cap microtubes Diamed Cat#DIATEC-2740 15 mL polypropylene conical tubes FroggaBio Cat#TB15-25 Disposable hemocytometer Incyto Cat#DHC-N01-5 Refrigerated centrifuge (15 mL and 1.5 mL rotors) Avantor Cat#76468-136; Cat#MP76533-878 Mr. Frosty freezing container Sigma-Aldrich Cat#CLS432001 25 mL reservoir Corning Cat#RES-V-25-S *Organoids differentiated using STEMdiff Cerebral Organoid Kit (key resource table). ..

    Software:

    Article Title: Protocol for mechanical nuclei dissociation and isolation from frozen tissue and organoids for single-nucleus RNA sequencing.
    Article Snippet: Note: If working with a tissue typically composed of a large number of cells (or more than 2 million cells), dilute the sample 1:10 in DNase/RNase-free water directly into the tube containing Trypan Blue prior to counting. .. Biological samples Mouse brain tissue C57BL/6 (hemisphere) This study N/A Human ESC-derived cerebral organoids* This study WIBR1 Chemicals, peptides, and recombinant proteins Anti-Nucleus MicroBeads Miltenyi Biotec Cat#130-132-997 Bovine serum albumin (BSA) Bio Basic Cat# A0903 DAPI Sigma-Aldrich Cat#D9542 Dimethyl sulfoxide (DMSO) Sigma-Aldrich Cat#D8418 DNase I Solution STEMCELL Technologies Cat#07900 Hydrochloric acid Sigma-Aldrich Cat#H1758 Nuclei Extraction Buffer Miltenyi Biotec Cat#130-128-024 Phosphate-buffered saline (D-PBS) Sigma-Aldrich Cat#P4474 RNase Inhibitor, Murine New England Biolabs Cat#M0314L Trypan Blue stain, 0.4% Thermo Fisher Scientific Cat#T10282 UltraPure DNase/RNase-Free Distilled Water Invitrogen Cat#10977-015 Critical commercial assays EVERCODE Nuclei Fixation v3 Parse Biosciences Cat#ECFN3300 STEMdiff Cerebral Organoid Kit STEMCELL Technologies Cat#08570 Software and algorithms BioRender BioRender https://www.biorender.com Other GentleMACS Dissociator Miltenyi Biotec Cat#130-093-235 GentleMACS C Tubes Miltenyi Biotec Cat#130-093-237 MACS MultiStand Miltenyi Biotec Cat#130-042-303 OctoMACS Separator Miltenyi Biotec Cat#130-042-109 MS Columns Miltenyi Biotec Cat#130-042-201 MACS SmartStrainers (100 μm) Miltenyi Biotec Cat#130-098-463 MACS SmartStrainers (70 μm) Miltenyi Biotec Cat#130-098-462 MACS SmartStrainers (30 μm) Miltenyi Biotec Cat#130-098-458 MACS Chill 15 Rack Miltenyi Biotec Cat#130-097-038 1.5 mL screw-cap microtubes Diamed Cat#DIATEC-2740 15 mL polypropylene conical tubes FroggaBio Cat#TB15-25 Disposable hemocytometer Incyto Cat#DHC-N01-5 Refrigerated centrifuge (15 mL and 1.5 mL rotors) Avantor Cat#76468-136; Cat#MP76533-878 Mr. Frosty freezing container Sigma-Aldrich Cat#CLS432001 25 mL reservoir Corning Cat#RES-V-25-S *Organoids differentiated using STEMdiff Cerebral Organoid Kit (key resource table). ..

    Magnetic Cell Separation:

    Article Title: Protocol for mechanical nuclei dissociation and isolation from frozen tissue and organoids for single-nucleus RNA sequencing.
    Article Snippet: Note: If working with a tissue typically composed of a large number of cells (or more than 2 million cells), dilute the sample 1:10 in DNase/RNase-free water directly into the tube containing Trypan Blue prior to counting. .. Biological samples Mouse brain tissue C57BL/6 (hemisphere) This study N/A Human ESC-derived cerebral organoids* This study WIBR1 Chemicals, peptides, and recombinant proteins Anti-Nucleus MicroBeads Miltenyi Biotec Cat#130-132-997 Bovine serum albumin (BSA) Bio Basic Cat# A0903 DAPI Sigma-Aldrich Cat#D9542 Dimethyl sulfoxide (DMSO) Sigma-Aldrich Cat#D8418 DNase I Solution STEMCELL Technologies Cat#07900 Hydrochloric acid Sigma-Aldrich Cat#H1758 Nuclei Extraction Buffer Miltenyi Biotec Cat#130-128-024 Phosphate-buffered saline (D-PBS) Sigma-Aldrich Cat#P4474 RNase Inhibitor, Murine New England Biolabs Cat#M0314L Trypan Blue stain, 0.4% Thermo Fisher Scientific Cat#T10282 UltraPure DNase/RNase-Free Distilled Water Invitrogen Cat#10977-015 Critical commercial assays EVERCODE Nuclei Fixation v3 Parse Biosciences Cat#ECFN3300 STEMdiff Cerebral Organoid Kit STEMCELL Technologies Cat#08570 Software and algorithms BioRender BioRender https://www.biorender.com Other GentleMACS Dissociator Miltenyi Biotec Cat#130-093-235 GentleMACS C Tubes Miltenyi Biotec Cat#130-093-237 MACS MultiStand Miltenyi Biotec Cat#130-042-303 OctoMACS Separator Miltenyi Biotec Cat#130-042-109 MS Columns Miltenyi Biotec Cat#130-042-201 MACS SmartStrainers (100 μm) Miltenyi Biotec Cat#130-098-463 MACS SmartStrainers (70 μm) Miltenyi Biotec Cat#130-098-462 MACS SmartStrainers (30 μm) Miltenyi Biotec Cat#130-098-458 MACS Chill 15 Rack Miltenyi Biotec Cat#130-097-038 1.5 mL screw-cap microtubes Diamed Cat#DIATEC-2740 15 mL polypropylene conical tubes FroggaBio Cat#TB15-25 Disposable hemocytometer Incyto Cat#DHC-N01-5 Refrigerated centrifuge (15 mL and 1.5 mL rotors) Avantor Cat#76468-136; Cat#MP76533-878 Mr. Frosty freezing container Sigma-Aldrich Cat#CLS432001 25 mL reservoir Corning Cat#RES-V-25-S *Organoids differentiated using STEMdiff Cerebral Organoid Kit (key resource table). ..

    Mass Spectrometry:

    Article Title: Protocol for mechanical nuclei dissociation and isolation from frozen tissue and organoids for single-nucleus RNA sequencing.
    Article Snippet: Note: If working with a tissue typically composed of a large number of cells (or more than 2 million cells), dilute the sample 1:10 in DNase/RNase-free water directly into the tube containing Trypan Blue prior to counting. .. Biological samples Mouse brain tissue C57BL/6 (hemisphere) This study N/A Human ESC-derived cerebral organoids* This study WIBR1 Chemicals, peptides, and recombinant proteins Anti-Nucleus MicroBeads Miltenyi Biotec Cat#130-132-997 Bovine serum albumin (BSA) Bio Basic Cat# A0903 DAPI Sigma-Aldrich Cat#D9542 Dimethyl sulfoxide (DMSO) Sigma-Aldrich Cat#D8418 DNase I Solution STEMCELL Technologies Cat#07900 Hydrochloric acid Sigma-Aldrich Cat#H1758 Nuclei Extraction Buffer Miltenyi Biotec Cat#130-128-024 Phosphate-buffered saline (D-PBS) Sigma-Aldrich Cat#P4474 RNase Inhibitor, Murine New England Biolabs Cat#M0314L Trypan Blue stain, 0.4% Thermo Fisher Scientific Cat#T10282 UltraPure DNase/RNase-Free Distilled Water Invitrogen Cat#10977-015 Critical commercial assays EVERCODE Nuclei Fixation v3 Parse Biosciences Cat#ECFN3300 STEMdiff Cerebral Organoid Kit STEMCELL Technologies Cat#08570 Software and algorithms BioRender BioRender https://www.biorender.com Other GentleMACS Dissociator Miltenyi Biotec Cat#130-093-235 GentleMACS C Tubes Miltenyi Biotec Cat#130-093-237 MACS MultiStand Miltenyi Biotec Cat#130-042-303 OctoMACS Separator Miltenyi Biotec Cat#130-042-109 MS Columns Miltenyi Biotec Cat#130-042-201 MACS SmartStrainers (100 μm) Miltenyi Biotec Cat#130-098-463 MACS SmartStrainers (70 μm) Miltenyi Biotec Cat#130-098-462 MACS SmartStrainers (30 μm) Miltenyi Biotec Cat#130-098-458 MACS Chill 15 Rack Miltenyi Biotec Cat#130-097-038 1.5 mL screw-cap microtubes Diamed Cat#DIATEC-2740 15 mL polypropylene conical tubes FroggaBio Cat#TB15-25 Disposable hemocytometer Incyto Cat#DHC-N01-5 Refrigerated centrifuge (15 mL and 1.5 mL rotors) Avantor Cat#76468-136; Cat#MP76533-878 Mr. Frosty freezing container Sigma-Aldrich Cat#CLS432001 25 mL reservoir Corning Cat#RES-V-25-S *Organoids differentiated using STEMdiff Cerebral Organoid Kit (key resource table). ..

    Polymerase Chain Reaction:

    Article Title: Sub-stoichiometric modifications of Aplysia californica tRNAs and tRNA fragments revealed by integrating intact and bottom-up mass spectrometry
    Article Snippet: Aplysia tRNA Glu CUC and tRNA Lys UUU were isolated from small RNA fractions using biotinylated complementary DNA probes (IDT) and streptavidin-functionalized Sepharose beads (Cytiva). .. First, 100 μL small RNA (∼400-500 ng/μL), 4 μL DNA probe (10 μM), 2.6 μL 20× SSC buffer (3 M sodium chloride, 300 mM trisodium citrate, pH adjusted to 7.0 with HCl), and 1 μL RNase inhibitor (New England Biolabs) were combined in a 200 μL PCR tube and incubated at 50 °C for 30 min. A 100 μL aliquot of the streptavidin-functionalized beads suspension was washed twice with 1 mL 0.5× SSC buffer by gentle trituration, centrifuged at 8000 g for 1 min, and the supernatant discarded. ..

    Suspension:

    Article Title: Sub-stoichiometric modifications of Aplysia californica tRNAs and tRNA fragments revealed by integrating intact and bottom-up mass spectrometry
    Article Snippet: Aplysia tRNA Glu CUC and tRNA Lys UUU were isolated from small RNA fractions using biotinylated complementary DNA probes (IDT) and streptavidin-functionalized Sepharose beads (Cytiva). .. First, 100 μL small RNA (∼400-500 ng/μL), 4 μL DNA probe (10 μM), 2.6 μL 20× SSC buffer (3 M sodium chloride, 300 mM trisodium citrate, pH adjusted to 7.0 with HCl), and 1 μL RNase inhibitor (New England Biolabs) were combined in a 200 μL PCR tube and incubated at 50 °C for 30 min. A 100 μL aliquot of the streptavidin-functionalized beads suspension was washed twice with 1 mL 0.5× SSC buffer by gentle trituration, centrifuged at 8000 g for 1 min, and the supernatant discarded. ..

    Gentle:

    Article Title: Sub-stoichiometric modifications of Aplysia californica tRNAs and tRNA fragments revealed by integrating intact and bottom-up mass spectrometry
    Article Snippet: Aplysia tRNA Glu CUC and tRNA Lys UUU were isolated from small RNA fractions using biotinylated complementary DNA probes (IDT) and streptavidin-functionalized Sepharose beads (Cytiva). .. First, 100 μL small RNA (∼400-500 ng/μL), 4 μL DNA probe (10 μM), 2.6 μL 20× SSC buffer (3 M sodium chloride, 300 mM trisodium citrate, pH adjusted to 7.0 with HCl), and 1 μL RNase inhibitor (New England Biolabs) were combined in a 200 μL PCR tube and incubated at 50 °C for 30 min. A 100 μL aliquot of the streptavidin-functionalized beads suspension was washed twice with 1 mL 0.5× SSC buffer by gentle trituration, centrifuged at 8000 g for 1 min, and the supernatant discarded. ..



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